Tag Archives: phylogenetics

BaTS (and Befi-BaTS), SHiAT, and Genome Convergence Pipeline have moved!

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Interpreting ‘tree space’ in the context of very large empirical datasets

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HYPHY Hack: Passing arguments to HYPHY for phylogenetics using the command-line

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Reviewing FastCodeML, a potential replacement for PAML’s codeml

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Using x-windows to render GUIs for server-client phylogenomics

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Our Nature paper! Genome-wide molecular convergence in echolocating mammals

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Molecular epidemiology and phylogeny reveals complex spatial dynamics of endemic canine parvovirus.

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Generation of neutralizing antibodies and divergence of SIVmac239 in cynomolgus macaques following short-term early antiretroviral therapy.

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Full-Length Characterization of Hepatitis C Virus Subtype 3a Reveals Novel Hypervariable Regions under Positive Selection during Acute Infection

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The within- and among-host evolution of chronically-infecting human RNA viruses

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