-
‘What’s Wrong With Broken Glass’ 12″ EP
Buy now - proceeds to Oxfam
iTunes | Spotify | More...“worth buying a turntable just to hear this.”
The Fly
“intriguing melodies… highly alluring.”
Q Magazine.com
“Stream of conscious lyrics.. like a late night busker serenading the drunks… Get it for the indie kid in your life.”
Clash Music
“a strange, yet fantastic collaboration”
The 405Appearing live!
Tags
abbey road activism BaTS Befi-BaTS bioinformatics blog brooklyn coding collaborations cycling dave wade-brown demo discography evolutionary biology furnace studios genomics gig HCV HIV informatics jackie paper journals live lonely joe parker minION music nanopore news performance phylogenetics phylogenomics phylogeny policy politics publications real-time real-time phylogenomics recording science shanty sotones video videos virus writing-
Recent Posts
Categories
Archives
- September 2019
- August 2019
- June 2019
- July 2018
- June 2018
- March 2018
- February 2018
- October 2017
- September 2017
- August 2017
- June 2017
- May 2017
- April 2017
- February 2017
- November 2016
- October 2016
- September 2016
- July 2016
- April 2016
- March 2016
- February 2016
- December 2015
- November 2015
- October 2015
- August 2015
- July 2015
- June 2015
- April 2015
- March 2015
- February 2015
- November 2014
- October 2014
- September 2014
- August 2014
- July 2014
- May 2014
- February 2014
- January 2014
- October 2013
- September 2013
- July 2013
- June 2013
- May 2013
- April 2013
- December 2012
- November 2012
- October 2012
- September 2012
- July 2012
- June 2012
- May 2012
- April 2012
- March 2012
- February 2012
- December 2011
- November 2011
- October 2011
- September 2011
- August 2011
- July 2011
- June 2011
- May 2011
- April 2011
- March 2011
- February 2011
- January 2011
- December 2010
- November 2010
- October 2010
- September 2010
- May 2010
- April 2010
- March 2010
- February 2010
- January 2010
- December 2009
- November 2009
- October 2009
- September 2009
- August 2009
- July 2009
- June 2009
- May 2009
- April 2009
- January 2009
- November 2008
- October 2008
- September 2008
- May 2008
- February 2008
- January 2008
- August 2007
- September 2006
Recent Comments
- Gerry Veerman on How to fake an OSX theme appearance in Linux Ubuntu MATE
- Joe Parker / Lonely Joe Parker on How to fake an OSX theme appearance in Linux Ubuntu MATE
- Gerry Veerman on How to fake an OSX theme appearance in Linux Ubuntu MATE
- Joe Parker / Lonely Joe Parker on HYPHY Hack: Passing arguments to HYPHY for phylogenetics using the command-line
- Adventures with ONT MinION at MBL’s Microbial Diversity Course | Lisa Johnson Cohen on Messing about with the MinION
Meta
Tag Archives: bioinformatics
Tent-seq: the paper (aka ‘field-based, real-time phylogenomics’)
Really proud to report that the first of our bona fide real-time phylogenomics papers is now out in Scientific Reports! In the paper we managed to show a number of things that are potentially really exciting, and I’ll get to … Continue reading
Posted in Science
Tagged bioinformatics, blast, field-based, minION, phylogenomics, real-time, real-time phylogenomics, sequencing
Leave a comment
Inference and informatics in a ‘sequenced’ world
Short lecture relating my recent work on real-time phylogenomics, implications for bioinformatics research and future directions of genomic/phylogenetic modelling to explicitly account for phylogeny, synteny and identity through coloured graphs. University of Reading, 2nd August 2017 Slides [SlideShare]: cc-by-nd Tweet … Continue reading
Posted in Publications, Talks
Tagged bioinformatics, evolutionary biology, genomics, graph theory, informatics, real-time phylogenomics
Leave a comment
Using field-based DNA sequencing to accelerate phylogenomics
Invited seminar at the Department of Zoology, Oxford University, 30th November 2016. Summary of our field-based real-time phylogenomics (MinION DNA sequencing) experiments this year, and applicability to broad-scale tree-of-life phylogenomics and macroevolutionary biology. Slides [SlideShare]: cc-by-nd Tweet this Digg Post … Continue reading
Posted in Publications, Talks
Tagged bioinformatics, evolutionary biology, genomics, informatics, real-time phylogenomics
Leave a comment
Why aren’t we benchmarking bioinformatics?
Talk presented at the #bench16 (benchmarking) symposium at KCL, London, Wed 20th April 2016. Funded by the SSI. Slides (Slideshare – cc-by-nd) Tweet this Digg Post to LinkedIn Slashdot Stumble This
Posted in Publications, Science, Talks
Tagged benchmarking, bioinformatics, computational science, presentations, symposium, talks
Leave a comment
Copying LOADS of files from a folder of LOADS *AND* LOADS more in OSX
Quick one this, as it’s a tricky problem I keep having to Google/SO. So I’m posting here for others but mainly myself too! Here’s the situation: you have a folder (with, ooh, let’s say 140,000 separate MinION reads, for instance…) … Continue reading
How to fake an OSX theme appearance in Linux Ubuntu MATE
I’ve recently been fiddling about and trying to fake an OSX-style GUI appearance in Linux Ubuntu MATE (15.04). This is partly because I prefer the OSX GUI (let’s be honest) and partly because most of my colleagues are also Mac … Continue reading
Posted in Blog, Coding, Science
Tagged bioinformatics, Mac, mate, mavericks, ubuntu, ubuntu MATE
5 Comments
Messing about with the MinION
Molecular phylogenetics – uncovering the history of evolution using signals in organisms’ genetic sequences – is a powerful science, the latest expression of the human desire to understand our common origins. But for all its achievements, I’d always felt something … Continue reading
Real-time Phylogenomics
General science talk about the potential of real-time phylogenomics, delivered at the Jodrell Lecture Theatre, Kew Gardens, November 2nd 2015 Slides [SlideShare]: cc-by-nc-nd Tweet this Digg Post to LinkedIn Slashdot Stumble This
Posted in Publications, Science, Talks
Tagged bioinformatics, evolutionary biology, genomics, informatics, live demo, nanopore, real-time phylogenomics
Leave a comment
Omics in extreme Environments (Lightweight bioinformatics)
Presentation on lightweight bioinformatics (Raspi / cloud computing) for real-time field-based analyses. Presented at iEOS2015, St. Andrews, 3-6th July 2015. Slides [SlideShare]: cc-by-nc-nd Tweet this Digg Post to LinkedIn Slashdot Stumble This
Posted in Publications, Science, Talks
Tagged bioinformatics, clout computing, fuzzy inference, genomics, lightweight bioinformatics, nanopore, noisey data, raspi, real-time
Leave a comment
Parsing numbers from multiple formats in Java
We were having a chat over coffee today and a question arose about merging data from multiple databases. At first sight this seems pretty easy, especially if you’re working with relational databases that have unique IDs (like, uh, a Latin … Continue reading
Posted in Blog, Coding
Tagged big data, bioinformatics, coding, data, database, java, programming
Leave a comment